Advanced Photon Source User Activity Report
Biological Science
A unique zinc-binding site revealed by the
high-resolution x-ray structure of homotrimeric Apo2L/TRAIL
S.G. Hymowitz, M.P. O'Connell, M.H. Ultsch, A. Hurst, K. Totpal, A.
Ashkenazi, R.F. Kelley, and A.M. de Vos
b-carbonic anhydrase
active site architecture is a mirror image of a-carbonic
anhydrases
E.F. Pai and M.S. Kimber
Binding of Cd ions to the cell wall of B.
Subtilis - an EXAFS study
M. Boyanov, D. Fowle, K. Kemner, B. Bunker, and J. Fein
Crystallographic evidence for Try157 functioning
as the active site base in human UDP-galactose 4-epimerase
J.B. Thoden, T.M. Wohlers, J.L. Fridovich-Keil, and H.M. Holden
Crystallographic studies of dsDNA phage HK97
structure and maturation
W.R. Wikoff, Z. Che, W. Schildkamp, L. Liljas, R.L. Duda, R.W. Hendrix,
and J.E. Johnson
Crystallographic studies of Thermus aquaticus
RNA polymerase
S.A. Darst, E.A. Campbell, and K. Murakami
Crystallographic studies of Thermus aquaticus
RNA polymerase
S.A. Darst, G. Zhang, E.A. Campbell, and C. Richter
Crystallographic studies on the ribosome, a large
macromolecular assembly exhibiting severe nonisomorphism, extreme beam
sensitivity, and no internal symmetry
A. Yonath, J. Harms, H.A. Hansen, A. Bashan, F. Schlunzen, I. Levin,
I. Kolln, A. Tocilj, I. Agmon, M. Peretz, H. Bartels, W.S. Bennett, S.
Krumbholz, D. Janell, S. Weinstein, T. Auerbach, H. Avila, M. Piolleti,
S. Morlang, and F. Franceschi
Crystallography of ribosomes
A. Yonath
Crystal structure of Bacillus subtilisYabJ,
a purine regulatory protein and member of the highly conserved YjgF family
J.L. Smith, S. Sinha, P. Rappu, S.C. Lange, P. Mantsala, and H. Zalkin
Crystal structure of bovine milk xanthine dehydrogenase
and its conversion to the oxidase form by proteolytic cleavage
E.F. Pai, C. Enroth, B.T. Eger, K. Okamoto, T. Nishino, and T. Nishino
Crystal structure of human glutathione synthetase
M.W. Parker, G. Polekhina, J. Rossjohn, P.G. Board, and R.R. Gali
Crystal structure of isocitrate dehydrogenase
from Bacillus subtilis
S.K. Singh, S.P. Miller, D.C. LaPorte, and L.J. Banaszak
Crystal structure of NAD-dependent glycerol-3-phosphate
dehydrogenase from Leishmania mexicana
S. Suresh, S. Turley, F.R. Opperdoes, P.A.M. Michels, and W.G.J. Hol
Crystal structure of nicotinamide mononucleotide
adenylyltransferase from Methanobacterium thermoautotrophicum with
bound NAD+
V. Saridakis, D. Christendat, M. Kimber, A.M. Edwards, and E.F. Pai
Crystal structure of the catalytic portion of
human HMG-CoA reductase
E.S. Istvan, M. Palnitkar, S.K. Buchanan, and J. Deisenhofer
Crystal structure of the E. coliYrdC protein
M. Egli, M. Teplova, V. Tereshko, R. Sanishvili, A. Joachimiak, and
W.E. Anderson
Crystal structure of the electron transfer flavoprotein,
ubiquinone oxidoreductase
J. Zhang, R. Paschke, F.E. Frerman, and J.-J.P. Kim
Crystal structures of open and closed forms
of binary and ternary complexes of the large fragment of Thermus aquaticus
DNA polymerase I: structural basis for nucleotide
incorporation
Y. Li, S. Korolev, and G. Waksman
Data collection and structure determination of
Pariacoto virus
L. Tang, K. Johnson, A. Ball, T. Lin, and J.E. Johnson
Direct evidence of structural changes affecting
electron transfer rate from QA to QB in photosynthetic
bacterial reaction center proteins probed by Fe2+ binding site
using XAFS
L. Chen, L. Utschig, P. Laible, S. Schlesselman, D. Hanson, and D.
Tiede
Electrostatic stress in catalysis: structure
and mechanism of the enzyme orotidine monophosphate decarboxlyase
E.F. Pai, N. Wu, Y. Mo, and J. Gao
Elucidating the medium-resolution structure of
ribosomal particles: an interplay between electron cryomicroscopy
and x-ray crystallography
A. Yonath, J. Harms, A. Tocilj, I. Levin, I. Agmon, H. Stark, I. Kolln,
M. van Heel, M. Cuff, F. Schlunzen, A. Bashan, and F. Franceschi
Functional universality and evolutionary diversity:
insights from the structure of the ribosome
A. Yonath and F. Franceschi
In vivox-ray diffraction of indirect flight
muscle from
Drosophila melanogaster
T.C. Irving and D.W. Maughan
Iron and lead sequestration at the soil-root
interface
C. Hansel, S. Fendorf, S. Sutton, and M. Newville
Lambda-6 light chain, Wil
P.R. Pokkuluri, A. Solomon, D.T. Weiss, F.J. Stevens, and M. Schiffer
Len_K103A
P.R. Pokkuluri, M. Szpunar, F.J. Stevens, and M. Schiffer
Len_K30T
P.R. Pokkuluri, X. Cai, F.J. Stevens, and M. Schiffer
Len_M4L/Y27dD/Q89D/T94H
P.R. Pokkuluri, X. Cai, M. Gu, F.J. Stevens, and M. Schiffer
Len_M4L/Y27dD/T94H
P.R. Pokkuluri, R. Raffen, L. Dieckman, C. Boogard, F.J. Stevens, and
M. Schiffer
Len_Q38D
P.R. Pokkuluri, X. Cai, F.J. Stevens, and M. Schiffer
Len_Q89L
P.R. Pokkuluri, X. Cai, G. Johnson, F.J. Stevens, and M. Schiffer
Len_Y27dD
P.R. Pokkuluri, R. Raffen, F.J. Stevens, and M. Schiffer
MAD phasing on the SBC-CAT 19-ID undulator
beamline at the APS
R. Sanishvili, G. Evans, M. Walsh, R. Zhang, R. Alkire, and A. Joachimiak
Mechanism of hyaluronan binding and degradation:
structure of Streptococcus pneumoniae hyaluronate lyase in complex
with hyaluronic acid disaccharide at 1.7 Å resolution
K. Ponnuraj and M.J. Jedrzejas
Metal compounds as tools for the construction
and the interpretation of medium-resolution maps of ribosomal particles
A. Yonath, S. Weinstein, W. Jahn, C. Glotz, F. Schlunzen, I. Levin,
D. Janell, J. Harms, I. Kolln, H.A. Hansen, M. Gluhmann, W.S. Bennett,
H. Bartels, A. Bashan, I. Agmon, M. Kessler, M. Pioletti, H. Avila, K.
Anagnostopoulos, M. Peretz, T. Auerbach, and F. Franceschi
Microdiffraction of DNA-membrane self-assemblies
for gene delivery applications
G. Wong, Y. Li, I. Koltover, C. Safinya, Z. Cai, and W. Yun
Monomeric sarcosine oxidase: structure of a
covalently flavinylated amine oxidizing enzyme
P. Trickey, M. Wagner, M.S. Jorns, and F.S. Mathews
N10-formyltetrahydrofolate synthetase
R. Radfar, W. Minor, and L. Lebioda
Nuclear inelastic scattering of synchrotron
radiation on metmyoglobin
K. Achterhold, C. Keppler, U. van Burck, W. Potzel, W. Sturhahn, E.E.
Alp, and F. Parak
Probing covalent flavinylation in the flavocytochrome
p-cresol
methylhydroxylase
L.M. Cunane, Z.-W. Chen, F.S. Mathews, and W.S. McIntire
Rapid protein crystal structure determination
using third-generation synchrotron sources
M.A. Walsh, I. Dementieva, G. Evans, R. Sanishvili, and A. Joachimiak
Sexual attraction in the silkworm moth: structure
of the pheromone-binding protein-bombykol complex
B.H. Sandler, L. Nikonova, W.S. Leal, and J. Clardy
Sma
P.R. Pokkuluri, R. Raffen, F.J. Stevens, and M. Schiffer
Small-angle x-ray scattering from concentrated
ternary mixtures of eye lens crystallins
G. Thurston, L. Lurio, S. Mochrie, O. Ogun, J. Pande, and G. Benedek
Small-angle x-ray scattering studies of tertiary
folding of tRNAphe
X. Fang, K. Littrell, X-j. Yang, S. Henderson, S. Seifert, P. Thiyagarajan,
T. Pan, and T.R. Sosnick
Structural and function changes in photosynthetic
bacterial reaction center proteins induced by incorporating different metal
ions
L. Chen, L. Utschig, P. Laible, S. Schlesselman, D. Hanson, and D.
Tiede
Structural determinants for visual arrestin's
specificity and basal state
C. Schubert, P.B. Sigler, and J.A. Hirsch
Structural determinants of preinitiation complex
assembly on human Pol II promoters
F.T.F. Tsai and P.B. Sigler
Structural studies of a functional form of
pneumolysin: a virulence factor from Streptococcus pneumoniae
S. Kelly and M.J. Jedrzejas
Structural studies of an ecotin variant
G. Pal, H. Christinger, A.A. Kossiakoff, and C. Wiesmann
Structural studies of a soluble monomeric quinohemoprotein
alcohol dehydrogenases from Pseudomonas putida HK5
F.S. Mathews, Z.-w. Chen, K. Matsushita, T. Yamashita, H. Toyama, O.
Adachi, and H.D. Bellamy
Structural studies of FceRI
C. Eigenbrot and J. Stamos
Structural studies of p185/HER2
F.F. Vajdos, H. Christinger, and A.M. de Vos
Structural studies of the recombinant flavin-binding
domain of bakers yeast flavocytochrome b2
L.M. Cunane, J.D. Barton, Z.-w. Chen, F.S. Mathews, F.E. Welsh, S.K.
Chapman, and G.A. Reid
Structure and recognition of sheared tandem
G x A base pairs associated with human centromere DNA sequence at atomic
resolution
Y.G. Gao, H. Robinson, R. Sanishvili, A. Joachimiak, and A.H. Wang
Structure determination of Ascaris pepsin
inhibitor-3 by MAD phasing
K.K.S. Ng, J.F.W. Peterson, M.M. Cherney, C. Garen, M.N.G. James, J.L.
Zalatoris, C. Rao-Naik, B.M. Dunn, M.R. Martzen, and R.J. Peanasky
Structure determination of Streptomyces plicatusb-N-acetylhexosaminidase
by MAD phasing
B.L. Mark, B.L. Triggs-Raine, and M. James
Structure of a manganese-containing homoprotocatechuate
2,3-dioxygenase from Arthrobacter globiformus CM-2 at 1.5 Å
resolution
M. Vetting and D. Ohlendorf
Structure of homoprotocatechuate 2,3-dioxygenase
from Brevibacterium fuscum at 1.6 Å resolution
M. Vetting and D. Ohlendorf
Structure of streptococcal pyrogenic exotoxin A
C. Earhart, G. Vath, M. Roggiani, P. Schlievert, and D. Ohlendorf
Structure studies of g-carboxymuconolactone
decarboxylase from Acinetobacter sp. ADP1
M. Vetting and D. Ohlendorf
Submillisecond time-resolved small-angle x-ray
scattering from b-lactoglobulin
L. Pollack, M. Tate, G. Toombes, A. Finnefrock, S. Gruner, C. Kalidas,
S. Trotter, C. Batt, N. Darnton, R. Austin, L. Lurio, and S. Mochrie
Succinyl-CoA synthetase and succinyl-CoA:3-oxoacid
CoA transferase
M.E. Fraser and W.T. Wolodko
The small ribosomal subunit from Thermus thermophilusat
4.5 Å resolution: pattern fittings and the identification of
a functional site
A. Yonath, A. Tocilj, F. Schlunzen, D. Janell, M. Gluhmann, H.A. Hansen,
J. Harms, A. Bashan, H. Bartels, I. Agmon, and F. Franceschi
The small subunit of carbamoyl phosphate synthetase:
snapshots along the reaction pathway
J.B. Thoden, X. Huang, F.M. Raushel, and H.M. Holden
The structural basis for the oriented assembly
of a TBP/TFB/promoter complex
O. Littlefield, Y. Korkhin, and P. Sigler
The Structural Biology Center at the Advanced
Photon Source
G. Rosenbaum, R. Alkire, N.C. Duke, S.L. Ginell, F. Rotella, R. Sanishvilli,
R. Zhang, and A. Joachimiak
The structure of the ligand-binding domain of
neurexin 1b: regulation of LNS domain function
by alternative splicing
G. Rudenko, T. Nguyen, Y. Chelliah, T.C. Sudhof, and J. Deisenhofer
The three-dimensional molecular packing structure
of collagen
J. Orgel, T. Wess, A. Miller, T. Irving, and A. Hammersly
The three-dimensional structure of Escherichia
coliasparagine synthetase B: a short journey from substrate to
product
T.M. Larsen, S.K. Boehlein, S.M. Schuster, N.G.J. Richards, J.B. Thoden,
H.M. Holden, and I. Rayment
Thymidylate synthase
J. Phan, W. Minor, and L. Lebioda
Time-efficient data collection on crystals of
the large ribosomal subunit from Haloarcula marimortui
P. Nissen, N. Ban, J. Hansen, P.B. Moore, and T.A. Steitz
Ultrahigh-resolution diffraction from the 'blue'
copper protein anicyanin
C.J. Carrell, Z.-W. Chen, L.M. Cunane, P. Trickey, and F.S. Mathews
Un- and refolding kinetics of WT staphylococcal
nuclease
J. Woenckhaus, R. Köhling, C.A. Royer, P. Thiyagarajan, K. Littrell,
S. Seifert, and R. Winter
Using Q-XAS to determine zinc speciation in
a contaminated environment
S. Webb and J. Gaillard
Viral and human membrane glycoproteins
D. Wiley
X-ray absorption studies on the early development
of Xenopus laevis (frog) oocytes
K. Zhang and D. Auld
X-ray crystallography of bovine rhodopsin
T. Okada, I. Le Trong, C.A. Behnke, B.A. Fox, D.C. Teller, R.E. Stenkamp,
and K. Palczewski
X-ray crystal structure of peptide-bound GroEL
L. Chen and P.B. Sigler
X-ray diffraction studies of cardiac muscle
T.C. Irving, J. Konhilas, D. Perry, R. Fischetti, and P.P. deTombe
X-ray diffraction studies of the molecular substructure
of human articular cartilage
M. Aurich, J. Mollenhauer, and T.C. Irving
X-ray fiber diffraction of the indirect flight
muscle of Lethocerus indicus
M.K. Reedy, J.W. Squire, B. Baunann, A. Stewart, R. Fischetti, and
T. Irving
X-ray imaging and microscopy of plants and
fungi
W. Yun, S.T. Pratt, R.M. Miller, Z. Cai, D.B. Hunter, A.G. Jarstfer,
K.M. Kemner, B. Lai, H.-R. Lee, D.G. Legnini, W. Rodrigues, and C.I. Smith
X-ray studies of recombinant rat kidney long-chain
hydroxy acid oxidase
L.M. Cunane, J.D. Barton, Z.-w. Chen, F.S. Mathews, A. Belmouden, K.H.D.
Lê, and F. Lederer