APS Recent Publications | For the week ending 05.22.2016 This list of entries in the APS Publications Database does not include abstracts, invited talks, awards, magazine articles, or patents. For complete lists, search the APS Publications Database. Inquiries about or submissions to the publications database should be directed to apspubs@aps.anl.gov. http://aps.anl.gov/Science/Publications/Recent/ Fri, 27 May 2016 08:28:30 GMT Journal Article Novel Binding Motif and New Flexibility Revealed by Structural Analyses of a Pyruvate Dehydrogenase-Dihydrolipoyl Acetyltransferase Subcomplex from the Escherichia coli Pyruvate Dehydrogenase Multienzyme Complex http://www.jbc.org/content/289/43/30161.abstract?sid=abfa2042-50d1-4a75-92ab-3833514f71bc Junjie Wang Palaniappa Arjunan, Novel Binding Motif and New Flexibility Revealed by Structural Analyses of a Pyruvate Dehydrogenase-Dihydrolipoyl Acetyltransferase Subcomplex from the Escherichia coli Pyruvate Dehydrogenase Multienzyme Complex," J. Biol. Chem. 289 (43), 30161-30176 ( 2014). DOI: 10.1074/jbc.M114.592915 http://www.jbc.org/content/289/43/30161.abstract?sid=abfa2042-50d1-4a75-92ab-3833514f71bc Tue, 17 May 2016 12:01:00 -0500 Structure of CfaA Suggests a New Family of Chaperones Essential for Assembly of Class 5 Fimbriae http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1004316 April Fordyce Rui Bao, Structure of CfaA Suggests a New Family of Chaperones Essential for Assembly of Class 5 Fimbriae," PLoS Patho. 10 (8), e1004316-1-e1004316-14 ( 2014). DOI: 10.1371/journal.ppat.1004316 http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1004316 Mon, 16 May 2016 12:01:00 -0500 Lithium Assisted 'Dissolution–Alloying' Synthesis of Nanoalloys from Individual Bulk Metals http://pubs.acs.org/doi/abs/10.1021/acs.chemmater.6b00216 James R. Gallagher Heather M. Barkholtz, Lithium Assisted 'Dissolution–Alloying' Synthesis of Nanoalloys from Individual Bulk Metals," Chem. Mater. 28 (7), 2267-2277 ( 2016). DOI: 10.1021/acs.chemmater.6b00216 http://pubs.acs.org/doi/abs/10.1021/acs.chemmater.6b00216 Mon, 16 May 2016 12:01:00 -0500 Stapled HIV-1 peptides recapitulate antigenic structures and engage broadly neutralizing antibodies http://www.nature.com/nsmb/journal/v21/n12/full/nsmb.2922.html Adriana Irimia Gregory H. Bird, Stapled HIV-1 peptides recapitulate antigenic structures and engage broadly neutralizing antibodies," Nat. Struct. Mol. Biol. 21 , 1058-1067 ( 2014). DOI: 10.1038/nsmb.2922 http://www.nature.com/nsmb/journal/v21/n12/full/nsmb.2922.html Tue, 17 May 2016 12:01:00 -0500 Crystallization and preliminary X-ray diffraction analysis of Hypocrea jecorina Cel7A in two new crystal forms http://journals.iucr.org/f/issues/2014/06/00/fw5452/index.html Matthew J. Cuneo Annette M. Bodenheimer, Crystallization and preliminary X-ray diffraction analysis of Hypocrea jecorina Cel7A in two new crystal forms," Acta Crystallogr. F 70 (6), 773-776 ( 2014). DOI: 10.1107/S2053230X14008851 http://journals.iucr.org/f/issues/2014/06/00/fw5452/index.html Tue, 17 May 2016 12:01:00 -0500 Host-Primed Ebola Virus GP Exposes a Hydrophobic NPC1 Receptor-Binding Pocket, Revealing a Target for Broadly Neutralizing Antibodies http://mbio.asm.org/content/7/1/e02154-15.full Esther Ndungo Zachary A. Bornholdt, Host-Primed Ebola Virus GP Exposes a Hydrophobic NPC1 Receptor-Binding Pocket, Revealing a Target for Broadly Neutralizing Antibodies," mBio 7 (1), e02154-1-e02154-15 ( 2016). DOI: 10.1128/mBio.02154-15 http://mbio.asm.org/content/7/1/e02154-15.full Fri, 20 May 2016 12:01:00 -0500 Structure of the human Cereblon–DDB1–lenalidomide complex reveals basis for responsiveness to thalidomide analogs http://www.nature.com/nsmb/journal/v21/n9/full/nsmb.2874.html Antonia Lopez-Girona Philip P. Chamberlain, Structure of the human Cereblon–DDB1–lenalidomide complex reveals basis for responsiveness to thalidomide analogs," Nat. Struct. Mol. Biol. 21 (9), 803-809 ( 2014). DOI: 10.1038/nsmb.2874 http://www.nature.com/nsmb/journal/v21/n9/full/nsmb.2874.html Wed, 18 May 2016 12:01:00 -0500 Structural basis for misfolding in myocilin-associated glaucoma http://hmg.oxfordjournals.org/content/24/8/2111.long Shannon E. Hill Rebecca K. Donegan, Structural basis for misfolding in myocilin-associated glaucoma," Hum. Mol. Genet. 24 (8), 2111-2124 (15). DOI: 10.1093/hmg/ddu730 http://hmg.oxfordjournals.org/content/24/8/2111.long Wed, 18 May 2016 12:01:00 -0500 The structure of the C-terminal domain of the Zaire ebolavirus nucleoprotein http://journals.iucr.org/d/issues/2014/09/00/be5269/index.html Paulina J. Dziuba&#324, Urszula Derewenda ska, The structure of the C-terminal domain of the Zaire ebolavirus nucleoprotein," Acta Crystallogr. D 70 (9), 2420-2429 ( 2014). DOI: 10.1107/S1399004714014710 http://journals.iucr.org/d/issues/2014/09/00/be5269/index.html Mon, 16 May 2016 12:01:00 -0500 Structural insights into translational recoding by frameshift suppressor tRNA[superscript SufJ] http://rnajournal.cshlp.org/content/20/12/1944.abstract Tatsuya Maehigashi Crystal E. Fagan, Structural insights into translational recoding by frameshift suppressor tRNA[superscript SufJ]," RNA 20 , 1944-1954 (14). DOI: 10.1261/rna.046953.114 http://rnajournal.cshlp.org/content/20/12/1944.abstract Tue, 17 May 2016 12:01:00 -0500 The XMAP215 family drives microtubule polymerization using a structurally diverse TOG array http://www.molbiolcell.org/content/25/16/2375.long Amy E. Howard Jaime C. Fox, The XMAP215 family drives microtubule polymerization using a structurally diverse TOG array," Mol. Biol. Cell 25 (16), 2375-2392 ( 2014). DOI: 10.1091/mbc.E13-08-0501 http://www.molbiolcell.org/content/25/16/2375.long Mon, 16 May 2016 12:01:00 -0500 Complexes of Neutralizing and Non-Neutralizing Affinity Matured Fabs with a Mimetic of the Internal Trimeric Coiled-Coil of HIV-1 gp41 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0078187 Mi Li Elena Gustchina, Complexes of Neutralizing and Non-Neutralizing Affinity Matured Fabs with a Mimetic of the Internal Trimeric Coiled-Coil of HIV-1 gp41," PLoS One 8 (11), e78187-1-e78187-15 ( 2013). DOI: 10.1371/journal.pone.0078187 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0078187 Mon, 16 May 2016 12:01:00 -0500 Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI http://www.nature.com/articles/srep04246 Rebecca L. Nugent John R. Horton, Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI," Sci. Rep. 4 , 4246-1-4246-9 ( 2014). DOI: 10.1038/srep04246 http://www.nature.com/articles/srep04246 Mon, 16 May 2016 12:01:00 -0500 Crystal Structure of Korean Pine (Pinus koraiensis) 7S Seed StorageProtein with Copper Ligands http://pubs.acs.org/doi/abs/10.1021/jf4039887 Yang Wang Tengchuan Jin, Crystal Structure of Korean Pine (Pinus koraiensis) 7S Seed StorageProtein with Copper Ligands," J. Agric. Food Chem. 62 (1), 222-228 ( 2014). DOI: 10.1021/jf4039887 http://pubs.acs.org/doi/abs/10.1021/jf4039887 Tue, 17 May 2016 12:01:00 -0500 Asymmetric magnetic proximity effect in a Pd/Co/Pd trilayer system http://www.nature.com/articles/srep25391 Kyung Mee Song Dong-Ok Kim, Asymmetric magnetic proximity effect in a Pd/Co/Pd trilayer system," Sci. Rep. 6 , 25391-1-25391 ( 2016). DOI: 10.1038/srep25391 http://www.nature.com/articles/srep25391 Tue, 17 May 2016 12:01:00 -0500 Polar metals by geometric design http://www.nature.com/nature/journal/v533/n7601/full/nature17628.html D. Puggioni T.H. Kim, Polar metals by geometric design," Nature 533 , 68-72 ( 2016). DOI: 10.1038/nature17628 http://www.nature.com/nature/journal/v533/n7601/full/nature17628.html Tue, 17 May 2016 12:01:00 -0500 Structural Basis of Allosteric Activation of Sterile Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates http://www.jbc.org/content/289/47/32617 Ying Wu Leonardus M.I. Koharudin, Structural Basis of Allosteric Activation of Sterile Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates," J. Biol. Chem. 289 (47), 32617-32627 ( 2014). DOI: 10.1074/jbc.M114.591958 http://www.jbc.org/content/289/47/32617 Tue, 17 May 2016 12:01:00 -0500 Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes http://rnajournal.cshlp.org/content/20/10/1548.long Kirsten E. Hoff Alexander R. Kovach, Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes," RNA Soc. 20 (10), 1548-1559 (14). DOI: 10.1261/rna.044032.113 http://rnajournal.cshlp.org/content/20/10/1548.long Tue, 17 May 2016 12:01:00 -0500 Structure of a Eukaryotic RNase III Postcleavage Complex Reveals a Double-Ruler Mechanism for Substrate Selection http://dx.doi.org/10.1016/j.molcel.2014.03.006 Mathieu Lavoie Yu-He Liang, Structure of a Eukaryotic RNase III Postcleavage Complex Reveals a Double-Ruler Mechanism for Substrate Selection," Mol. Cell 54 (3), 431-444 ( 2014). DOI: 10.1016/j.molcel.2014.03.006 http://dx.doi.org/10.1016/j.molcel.2014.03.006 Wed, 18 May 2016 12:01:00 -0500 Structures of Kibdelomycin Bound to Staphylococcus aureus GyrB and ParE Showed a Novel U-Shaped Binding Mode http://pubs.acs.org/doi/abs/10.1021/cb5001197 Sangita Patel Jun Lu, Structures of Kibdelomycin Bound to Staphylococcus aureus GyrB and ParE Showed a Novel U-Shaped Binding Mode," ACS Chem. Biol. 9 (9), 2023-2031 ( 2014). DOI: 10.1021/cb5001197 http://pubs.acs.org/doi/abs/10.1021/cb5001197 Wed, 18 May 2016 12:01:00 -0500 A Structurally Unique E2-Binding Domain Activates Ubiquitination by the ERAD E2, Ubc7p, through Multiple Mechanisms http://dx.doi.org/10.1016/j.molcel.2013.04.004 Yu-He Liang Meredith B. Metzger, A Structurally Unique E2-Binding Domain Activates Ubiquitination by the ERAD E2, Ubc7p, through Multiple Mechanisms," Mol. Cell 50 (4), 516-527 ( 2013). DOI: 10.1016/j.molcel.2013.04.004 http://dx.doi.org/10.1016/j.molcel.2013.04.004 Mon, 16 May 2016 12:01:00 -0500 Structural characterization of the virulence factor nuclease A from Streptococcus agalactiae http://journals.iucr.org/d/issues/2014/11/00/mn5067/index.html Philippe Gaudu Andrea F. Moon, Structural characterization of the virulence factor nuclease A from Streptococcus agalactiae," Acta Crystallogr. D 70 (11), 2937-2949 ( 2014). DOI: 10.1107/S1399004714019725 http://journals.iucr.org/d/issues/2014/11/00/mn5067/index.html Tue, 17 May 2016 12:01:00 -0500 Human FMRP contains an integral tandem Agenet (Tudor) and KH motif in the amino terminal domain http://hmg.oxfordjournals.org/content/24/6/1733.long Hideharu Hashimoto Leila K. Myrick, Human FMRP contains an integral tandem Agenet (Tudor) and KH motif in the amino terminal domain," Hum. Mol. Genet. 24 (6), 1733-1740 ( 2015). DOI: 10.1093/hmg/ddu586 http://hmg.oxfordjournals.org/content/24/6/1733.long Wed, 18 May 2016 12:01:00 -0500 A Highly Hydroxide Conductive, Chemically Stable Anion Exchange Membrane, Poly(2,6 dimethyl 1,4 phenylene oxide)-b-Poly(vinyl benzyl trimethyl ammonium), for Electrochemical Applications http://jes.ecsdl.org/content/163/7/H513.abstract Himanshu N. Sarode Tara P. Pandey, Vito Di Noto , A Highly Hydroxide Conductive, Chemically Stable Anion Exchange Membrane, Poly(2,6 dimethyl 1,4 phenylene oxide)-b-Poly(vinyl benzyl trimethyl ammonium), for Electrochemical Applications," J. Electrochem. Soc. 163 (7), H513-H520 (16). DOI: 10.1149/2.0421607jes http://jes.ecsdl.org/content/163/7/H513.abstract Mon, 16 May 2016 12:01:00 -0500 Supramolecular Elastomers. Particulate [beta]-Sheet Nanocrystal-Reinforced Synthetic Elastic Networks http://pubs.acs.org/doi/abs/10.1021/acs.macromol.6b00003 Xuesong Yan Joseph J. Scavuzzo, Supramolecular Elastomers. Particulate [beta]-Sheet Nanocrystal-Reinforced Synthetic Elastic Networks," Macromolecules 49 (7), 2688-2697 ( 2016). DOI: 10.1021/acs.macromol.6b00003 http://pubs.acs.org/doi/abs/10.1021/acs.macromol.6b00003 Mon, 16 May 2016 12:01:00 -0500 The Mechanism of Dynein Light Chain LC8-mediated Oligomerization of the Ana2 Centriole Duplication Factor http://www.jbc.org/content/289/30/20727.long Erin M. Romes Lauren K. Slevin, The Mechanism of Dynein Light Chain LC8-mediated Oligomerization of the Ana2 Centriole Duplication Factor," J. Biol. Chem. 289 (30), 20727-20739 ( 2014). DOI: 10.1074/jbc.M114.576041 http://www.jbc.org/content/289/30/20727.long Mon, 16 May 2016 12:01:00 -0500 X-Ray Structure and Inhibition of 3C-like Protease from Porcine Epidemic Diarrhea Virus http://www.nature.com/articles/srep25961 Brandon J. Anson Sarah E. St. John, X-Ray Structure and Inhibition of 3C-like Protease from Porcine Epidemic Diarrhea Virus," Sci. Rep. 6 , 25961-1-25961-10 ( 2016). DOI: 10.1038/srep25961 http://www.nature.com/articles/srep25961 Tue, 17 May 2016 12:01:00 -0500 Altered Intersubunit Communication Is the Molecular Basis for Functional Defects of Pathogenic p97 Mutants http://www.jbc.org/content/288/51/36624.full Di Xia Wai Kwan Tang, Altered Intersubunit Communication Is the Molecular Basis for Functional Defects of Pathogenic p97 Mutants," J. Biol. Chem. 288 (51), 36624-36635 ( 2013). DOI: 10.1074/jbc.M113.488924 http://www.jbc.org/content/288/51/36624.full Tue, 17 May 2016 12:01:00 -0500 Sulfidization of Organic Freshwater Flocs from a Minerotrophic Peatland: Speciation Changes of Iron, Sulfur, and Arsenic http://pubs.acs.org/doi/abs/10.1021/acs.est.5b05791 Christian Mikutta Laurel K. ThomasArrigo, Sulfidization of Organic Freshwater Flocs from a Minerotrophic Peatland: Speciation Changes of Iron, Sulfur, and Arsenic," Environ. Sci. Technol. 50 (7), 3607-3616 ( 2016). DOI: 10.1021/acs.est.5b05791 http://pubs.acs.org/doi/abs/10.1021/acs.est.5b05791 Tue, 17 May 2016 12:01:00 -0500 Synthetic Inositol Phosphate Analogs Reveal that PPIP5K2 Has a Surface-Mounted Substrate Capture Site that Is a Target for Drug Discovery http://dx.doi.org/10.1016/j.chembiol.2014.03.009 Himali Y. Godage Huanchen Wang, Synthetic Inositol Phosphate Analogs Reveal that PPIP5K2 Has a Surface-Mounted Substrate Capture Site that Is a Target for Drug Discovery," Chem. Biol. 21 (5), 689-699 ( 2014). DOI: 10.1016/j.chembiol.2014.03.009 http://dx.doi.org/10.1016/j.chembiol.2014.03.009 Mon, 16 May 2016 12:01:00 -0500 Conformational Analysis of NMDA Receptor GluN1, GluN2, and GluN3 Ligand-Binding Domains Reveals Subtype-Specific Characteristics http://dx.doi.org/10.1016/j.str.2013.07.011 John Belcher Yongneng Yao, Conformational Analysis of NMDA Receptor GluN1, GluN2, and GluN3 Ligand-Binding Domains Reveals Subtype-Specific Characteristics," Structure 21 (10), 1788-1799 ( 2013). DOI: 10.1016/j.str.2013.07.011 http://dx.doi.org/10.1016/j.str.2013.07.011 Mon, 16 May 2016 12:01:00 -0500 Molecular Basis of 1-Deoxygalactonojirimycin Arylthiourea Binding to Human [alpha]-Galactosidase A: Pharmacological Chaperoning Efficacy on Fabry Disease Mutants http://pubs.acs.org/doi/abs/10.1021/cb500143h Teresa Mena-Barragan Yi Yu, M.Garc&#x00ED, Kousaku Ohno a Fernandez, Molecular Basis of 1-Deoxygalactonojirimycin Arylthiourea Binding to Human [alpha]-Galactosidase A: Pharmacological Chaperoning Efficacy on Fabry Disease Mutants," ACS Chem. Biol. 9 (7), 1460-1469 ( 2014). DOI: 10.1021/cb500143h http://pubs.acs.org/doi/abs/10.1021/cb500143h Wed, 18 May 2016 12:01:00 -0500 Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA http://rnajournal.cshlp.org/content/19/9/1226.long James A. Endrizzi Hui Zhang, Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA," RNA 19 , 1226-1237 ( 2013). DOI: 10.1261/rna.037077.112 http://rnajournal.cshlp.org/content/19/9/1226.long Mon, 16 May 2016 12:01:00 -0500 Conference Proceedings Book Book Chapter Dissertation